Publications

2025

Ellis T. J. (2025), “How and why to quantify pairwise pleiotropy and genotype-by-environment interactions” biorxiv 2026.01.09.698568
Fuster-Calvo A., Jaworski C.C, Ellis T. J., Baskett A. (2025), Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. Am J Bot. 2025;112:e70129
Ellis, T. J., Field D. L., Barton, N. H. (2025), Joint estimation of paternity, sibships and pollen dispersal in a snapdragon hybrid zone. Molecular Ecology mec.70051 (open access version)
Ellis, T. J., Nizhynska V., Pisupati R., Mollá-Morales A., Nordborg M., (2025), Bisulphite sequencing in the presence of cytosine-conversion errors, PLoS One 20(5): e0322539, Open Access

Dahan-Meir T., Ellis, T. J., Mafessoni, F., Sela, H., Rudich O., Manisterski J., Avivi-Ragolsky N., Raz A., Feldman M., Anikster Y, Nordborg M., Levy AA, (2024), 36-year study reveals the effects of microhabitats on a wild wheat population. Molecular Ecology, e17512. PDF.
Ellis, T. J., & Ågren, J. (2024). Adaptation to soil type contributes little to local adaptation in an Italian and a Swedish population of Arabidopsis thaliana growing on contrasting soils. Biology Letters. 20 (9):20240236. Open access.
Clauw, P., Ellis, T. J. (joint first author), Liu, H. J., & Sasaki, E. (2024). Beyond the standard GWAS-a guide for plant biologists. Plant And Cell Physiology, pcae079. PDF
Lee, G., Sanderson, B. J., Ellis, T. J., Dilkes, B. P., McKay, J. K., Ågren, J., & Oakley, C. G. (2024). A large-effect fitness trade-off across environments is explained by a single mutation affecting cold acclimation. Proceedings of the National Academy of Sciences, 121(6):e2317461121.
Butković A., Ellis, T. J. (joint first author), González, R., Jaegle, B., Nordborg, M., Elena S. F., (2024), Genetic basis of Arabidopsis thaliana responses to infection by naïve and adapted isolates of turnip mosaic virus, eLife 2023;12:RP89749. PDF

Durán, P., Ellis, T. J. (joint first author), Thiergart, T. , Ågren, J. & Hacquard, S.,(2022) Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations. New Phytologist, 236:608-621. PDF

Ellis, T. J., Postma, F. M., Oakley, C. G., & Ågren, J. (2021). Life‐history trade‐offs and the genetic basis of fitness in Arabidopsis thaliana. Molecular Ecology, 30(12):2846-2858. PDF
Thiergart, T., Durán, P., Ellis, T., Vannier, N., Garrido-Oter, R., Kemen, E., Roux F., Ågren J., Schulze-Lefert, P. & Hacquard, S. (2020). Root microbiota assembly and adaptive differentiation among European Arabidopsis populations. Nature ecology & evolution, 4(1):122-131. PDF
Ellis, T. J., Field, D. L., & Barton, N. H. (2018). Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering. Molecular Ecology Resources, 18(5):988-999. PDF
Ellis, T. J., & Field, D. L. (2016). Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae. Annals of Botany, 117(7):1133-1140. PDF
Streinzer, M., Ellis, T, Paulus, H. F., & Spaethe, J. (2010). Visual discrimination between two sexually deceptive Ophrys species by a bee pollinator. Arthropod-Plant Interactions, 4(3):141-148. PDF